Calls other rate functions in sequence and collects the results in a list.
Usage
getRates(
params,
n = initialN(params),
n_pp = initialNResource(params),
n_other = initialNOther(params),
effort,
t = 0,
...
)Arguments
- params
A MizerParams object
- n
A matrix of species abundances (species x size).
- n_pp
A vector of the resource abundance by size
- n_other
A list of abundances for other dynamical components of the ecosystem
- effort
The effort for each fishing gear
- t
The time for which to do the calculation (Not used by standard mizer rate functions but useful for extensions with time-dependent parameters.)
- ...
Unused
Details
By default this function returns a list with the following components:
encounter from
mizerEncounter()feeding_level from
mizerFeedingLevel()e from
mizerEReproAndGrowth()e_repro from
mizerERepro()e_growth from
mizerEGrowth()pred_rate from
mizerPredRate()pred_mort from
mizerPredMort()f_mort from
mizerFMort()mort from
mizerMort()rdi from
mizerRDI()rdd from
BevertonHoltRDD()resource_mort from
mizerResourceMort()
However you can replace any of these rate functions by your own rate
function if you wish, see setRateFunction() for details.
See also
Other rate functions:
getEGrowth(),
getEReproAndGrowth(),
getERepro(),
getEncounter(),
getFMortGear(),
getFMort(),
getFeedingLevel(),
getMort(),
getPredMort(),
getPredRate(),
getRDD(),
getRDI(),
getResourceMort()
Examples
rates <- getRates(NS_params)
names(rates)
#> [1] "encounter" "feeding_level" "e" "e_repro"
#> [5] "e_growth" "pred_rate" "pred_mort" "f_mort"
#> [9] "mort" "rdi" "rdd" "resource_mort"
identical(rates$encounter, getEncounter(NS_params))
#> [1] TRUE