Changelog

mizerExperimental 2.4.0

Allow tabs to set their title, see issue #37
resourceControl() now works also when the resource dynamics are constant.
Reproduction plot now calculates the reproduction success correctly also for non-zero reproduction level.
Clean-up of spectraTab code. Now button does not trigger already when it is displayed but only when it is pressed.
Call setBevertonHolt() only for the focus species.
The feature whereby one can call tuneParams() without a parameter to recover it from log files after a crash is now working again.
The catch tab now has the same functionality for calibration and matching as the biomass tab.
When changing predation kernel parameters, the search volume is also rescaled to keep the same encounter rate for larvae.
Now one can also match abundances to observed numbers instead of observed biomasses.
Extracted more of the plotting code into plot functions.
Corrected the plotting of observed catch.
Corrected the y-axis scale in density plots.
New abundanceTab() showing both biomasses and numbers.
Double-clicking on a species on the biomass graph now changes its biomass to the clicked value rather than the observed value.
Separated spectra and biomass tabs.
An observed biomass of 0 (not possible) is now converted to NA
Using the same theme as the mizer website
Beginnings of an example tab that can be used as a well-documented base for new custom tabs. Needs to be expanded to get better documentation.

Important change: The updated species abundance is now always calculated in the unchanged background.
Using params instead of p as argument name.
Many more help popups.
Main panel utilises all available space.
Add buttons and keyboard shortcuts for cycling through species.
Move tabs and controls into individual files and add roxygen comments.
New match argument that determines whether biomasses or yields or neither should be matched at each press of the steady button.
Remove the ability to upload params objects.
New growthControl controls.
New biomassTab tab.
Controls can now also update species sliders.
By default preserves erepro.
Scaling of background now happens by clicking on the slider without need for a ‘Go’ button.
Double-clicking on a growth curve plot now toggles between the panel view and the individual species view.
Do not overrride ggplot2 theme, just adjust font size.
Rename cutoff_size to biomass_cutoff everywhere.
Many more changes.

Much polishing of tuneParams() and some added documentation.
First stab at a validSim() function that will be useful when simulations produce non-finite values.
Graduated the updated setBevertonHolt() and the new getReproductionLevel() to mizer package.
Removed dislayFrames(), getBiomassFrame() and getSSBFrame() because these are superseeded by the new plotDataFrame() in mizer.
Removed the vignette explaining size-spectrum dynamics in single-species example because this has graduated to mizer.
Improvements to argument checks in getYieldVsF()

The version number will now always be that of the latest mizer package that this version of mizerExperimental requires.

Graduated animateSpectra(), addSpecies(), removeSpecies() and renameSpecies() to mizer package.
newSheldonParams() has graduated to mizer package under the new name newSingleSpeciesParams().
Improvements to tuneParams(), but still work in progress.

Graduated projectToSteady(), constantEggRDI(), customFunction() and compareParams() to mizer package.
Added a NEWS.md file to track changes to the package.
Vignette explaining size-spectrum dynamics in single-species example.
removeSpecies() work also with 3d pred kernel.
removeSpecies() to handles gear_params correctly