Plot change in biomass over time

A similar plot can now be produced with mizer's mizer::plotRelative(), which works directly on the arrays returned by mizer::getBiomass(), for example plotRelative(getBiomass(sim_original), getBiomass(sim)). Note that mizer::plotRelative() shows the symmetric relative difference \(2(N_2 - N_1)/(N_1 + N_2)\) rather than the percentage change relative to the reference.

Usage

plotBiomassRelative(sim, sim_original = NULL, species = NULL, ...)

plotlyBiomassRelative(sim, sim_original = NULL, species = NULL, ...)

Arguments

sim

A MizerSim object

sim_original

Another MizerSim object to compare the biomasses to. If NULL (default) then the biomasses are compared to the initial biomasses in sim.

species

The species to be selected. Optional. By default all target species are selected. A vector of species names, or a numeric vector with the species indices, or a logical vector indicating for each species whether it is to be selected (TRUE) or not.

...

Parameters passed to getBiomass()

Examples

plotBiomassRelative(NS_sim)
#> Warning: `plotBiomassRelative()` was deprecated in mizerExperimental 3.0.0.
#> ℹ Please use `mizer::plotRelative()` instead.
#> ℹ For example `plotRelative(getBiomass(sim_original), getBiomass(sim))`.

plotBiomassRelative(NS_sim, species = c("Cod", "Sole"))