Package index
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plotBiomassFlux() - Plot biomass flux
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plotBiomassRelative()plotlyBiomassRelative() - Plot change in biomass over time
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plotBiomassVsSpecies() - Plot the biomass against species
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plotDeath()plotlyDeath() - Plot the sources of external, predation and fishing mortality per species and size
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plotEnergyBudget()plotlyEnergyBudget() - Plot the energy budget of each species through size.
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plotNumberVsSpecies() - Plot the number against species
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plotResourceLevel() - Plot the proportion of the resource spectrum(s) compared to their carrying capacity
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plotResourcePred()plotlyResourcePred() - Plot the mortality applied on the resource spectrum(s)
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plotSpectra2() - Show two size spectra in the same plot
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plotSpectraRelative()plotlySpectraRelative() - Plot the relative difference between two spectra
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plotYieldRelative()plotlyYieldRelative() - Plot change in yield over time
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plotYieldVsF() - Plot a yield-vs-F curve
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plotYieldVsSize()plotlyYieldVsSize() - Plot the size distribution of the catch
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plotYieldVsSpecies() - Plot the yield against species
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matchYield() - Match observed yields
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markBackground() - Designate species as background species
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adjustBackgroundSpecies() - Retunes abundance of background species.
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removeBackgroundSpecies() - Remove all background species
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scaleAbundance() - Rescale Abundance
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scaleDownBackground() - Scale background down by a factor
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updateInitialValues() - Update the initial values
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pruneSpecies() - Removes species with abundance below a threshold
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getYieldVsF() - Calculate a yield-vs-F curve
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alignResource() - Rescale resource to be in line with fish community
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distanceSSLogYield() - Measure distance between current and previous state in terms of yield.
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yieldCalculator() - Calculates yield from steady sim