This budget is divided between growth, income, metabolic loss and reproduction.
Usage
plotEnergyBudget(
object,
species = NULL,
logarithmic = TRUE,
return_data = FALSE
)
plotlyEnergyBudget(object, species = NULL, logarithmic = TRUE, ...)Arguments
- object
An object of class MizerSim or MizerParams.
- species
The name of the predator species for which to plot the mortality.
- logarithmic
A boolean value that determines whether values should be displayed logarithmicly or linearly. Default is TRUE.
- return_data
A boolean value that determines whether the formatted data used for the plot is returned instead of the plot itself. Default value is FALSE
- ...
Other arguments (currently unused)
Value
A ggplot2 object, unless return_data = TRUE, in which case a list composed of
two slots is returned. First slot is a data frame with the four variables 'w', 'value',
'Type', 'Species and the second slot is a data frame with the five variables 'w_mat',
'w_max', 'Species', 'y_coord', 'Type' (to plot vertical lines).
See also
plotting_functions
Other plotting functions:
plotDeath(),
plotResourceLevel(),
plotResourcePred(),
plotYieldVsF(),
plotYieldVsSize()
Examples
# \donttest{
plotEnergyBudget(NS_params, species = "Cod")
# Returning the data frame
fr <- plotEnergyBudget(NS_params, return_data = TRUE)
str(fr)
#> List of 2
#> $ :'data.frame': 3736 obs. of 4 variables:
#> ..$ w : num [1:3736] 0.001 0.00119 0.00142 0.0017 0.00203 ...
#> ..$ value : num [1:3736] 0.039 0.0437 0.0489 0.0548 0.0614 ...
#> ..$ Type : chr [1:3736] "Growth" "Growth" "Growth" "Growth" ...
#> ..$ Species: Factor w/ 12 levels "Sprat","Sandeel",..: 1 1 1 1 1 1 1 1 1 1 ...
#> $ :'data.frame': 12 obs. of 5 variables:
#> ..$ w_mat : int [1:12] 13 4 23 99 21 75 78 39 105 165 ...
#> ..$ w_max : num [1:12] 33 36 100 334 324 ...
#> ..$ Species: Factor w/ 12 levels "Sprat","Sandeel",..: 1 2 3 4 5 6 7 8 9 10 ...
#> ..$ y_coord: num [1:12] 59.5 103.9 330.1 537.2 611.7 ...
#> ..$ Type : logi [1:12] NA NA NA NA NA NA ...
# }