Animation of the abundance spectra

animateSpectra(
  sim,
  species = NULL,
  resources = NULL,
  time_range,
  wlim = c(NA, NA),
  ylim = c(NA, NA),
  power = 1,
  total = FALSE
)

Arguments

sim: A MizerSim object
species: Name or vector of names of the species to be plotted. By default all species are plotted.
resources: Name or vector of names of the resources to be plotted. By default all resources are plotted.
time_range: The time range to animate over. Either a vector of values or a vector of min and max time. Default is the entire time range of the simulation.
wlim: A numeric vector of length two providing lower and upper limits for the w axis. Use NA to refer to the existing minimum or maximum.
ylim: A numeric vector of length two providing lower and upper limits for the y axis. Use NA to refer to the existing minimum or maximum. Any values below 1e-20 are always cut off.
power: The abundance is plotted as the number density times the weight raised to power. The default power = 1 gives the biomass density, whereas power = 2 gives the biomass density with respect to logarithmic size bins.
total: A boolean value that determines whether the total over all species in the system is plotted as well. Default is FALSE.

A plotly object