Animation of the abundance spectra

Usage

animateSpectra.mizerMRSim(
  sim,
  species = NULL,
  time_range,
  wlim = c(NA, NA),
  ylim = c(NA, NA),
  power = 1,
  total = FALSE,
  resource = TRUE,
  background = TRUE,
  ...,
  resources = NULL
)

Arguments

sim

A MizerSim object

species

Name or vector of names of the species to be plotted. By default all species are plotted.

time_range

The time range to animate over. Either a vector of values or a vector of min and max time. Default is the entire time range of the simulation.

wlim

A numeric vector of length two providing lower and upper limits for the w axis. Use NA to refer to the existing minimum or maximum.

ylim

A numeric vector of length two providing lower and upper limits for the y axis. Use NA to refer to the existing minimum or maximum. Any values below 1e-20 are always cut off.

power

The abundance is plotted as the number density times the weight raised to power. The default power = 1 gives the biomass density, whereas power = 2 gives the biomass density with respect to logarithmic size bins.

total

A boolean value that determines whether the total over all species in the system is plotted as well. Default is FALSE.

resource

Deprecated compatibility argument from mizer's generic.

background

Deprecated compatibility argument from mizer's generic.

...

Other arguments (currently unused).

resources

Name or vector of names of the resources to be plotted. By default all resources are plotted.

Value

A plotly object

See also

Other plotting functions: plotDiet, plotResourceLevel(), plotResourcePred(), plotSpectra