Multiple-resource project methods — project

Internal helpers and S3 methods used to make mizer's rate and projection generics work with the multiple-resource component.

Internal projection hook for predation mortality on multiple resources.

Usage

mizerMRBaseResource(params)

mizerMRValidBaseResource(params, n_pp)

# S3 method for class 'mizerMR'
getEncounter(
  params,
  n = initialN(params),
  n_pp = mizerMRBaseResource(params),
  n_other = initialNOther(params),
  t = 0,
  ...
)

# S3 method for class 'mizerMR'
getPredRate(
  params,
  n = initialN(params),
  n_pp = mizerMRBaseResource(params),
  n_other = initialNOther(params),
  t = 0,
  ...
)

# S3 method for class 'mizerMR'
getResourceMort(
  params,
  n = initialN(params),
  n_pp = mizerMRBaseResource(params),
  n_other = initialNOther(params),
  t = 0,
  ...
)

# S3 method for class 'mizerMR'
getRates(
  params,
  n = initialN(params),
  n_pp = mizerMRBaseResource(params),
  n_other = initialNOther(params),
  effort,
  t = 0,
  ...
)

# S3 method for class 'mizerMR'
projectEncounter(params, n, n_pp, n_other, t = 0, ...)

mizerMREncounter(params, n, n_pp, n_other, t = 0, ...)

mizerMRResourceEncounter(params, n_other)

# S3 method for class 'mizerMR'
projectResourceMort(params, n, n_pp, n_other, t = 0, pred_rate, ...)

Arguments

params: A mizerMR object.
n_pp: A resource abundance vector, or an MR resource array that will be replaced by the silenced built-in resource vector before calling mizer's base method.
n: A matrix of species abundances (species x size).
n_other: A list of abundances for other dynamical components.
t: Current projection time.
...: Further arguments passed along the mizer method chain.
effort: Fishing effort by gear.

Value

The return value depends on the method called: a rate array, a rate list, or a resource abundance vector.