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Changelog

Source: NEWS.md

mizerStarvation 0.2.0

Updated to the conventions of mizer 3.3.0, which is now the minimum required version.

  • setStarvation() now records the extension on the params object with mizer::recordExtension() instead of copying the whole session-wide chain returned by getRegisteredExtensions() into the extensions slot. The slot therefore lists only the extensions actually applied to the model, and each entry carries both the installation requirement and the version of mizerStarvation that the model conforms to. Code reading params@extensions[["mizerStarvation"]] now gets a named character vector with requirement and version entries rather than a bare requirement string.
  • setStarvation() writes starv_coef with given_species_params<-() so that it is recorded as user input, and validates and upgrades its argument with validParams() rather than only calling validObject().
  • starvMort() and getStarvMort() gained an explicit t argument, which is passed on to getEReproAndGrowth(). Previously the time was silently dropped, so starvation mortality was evaluated at t = 0 in models with time-dependent rates.
  • Bug fix: getStarvMort() ignored the n, n_pp and n_other arguments it was given and always used the initial values stored in the params object. It now uses the abundances passed to it. Calls that relied on the defaults are unaffected.