Extends mizer::getBiomass() for mizerShelf and mizerShelfSim objects
by adding the detritus (resource spectrum) and any scalar other-component
biomasses (e.g. carrion).
Arguments
- object
A
mizerShelformizerShelfSimobject.- ...
Passed to the base
mizer::getBiomass()method.
Value
For mizerShelf: a named numeric vector of species/component
biomasses. For mizerShelfSim: an ArrayTimeBySpecies matrix
(time x species/component) with species biomasses followed by Detritus
and other component biomasses.
Examples
getBiomass(NWMed_params)
#> Small DF worms Small DF crustacea
#> 6.514945e-01 1.603410e-01
#> DF worms Endobenthic pred. crustacea
#> 7.829609e-01 7.135015e-02
#> Suprabenthic crustacea Endobenthic pred. worms
#> 3.067995e-02 3.784602e-01
#> Large DF worms Starfish
#> 6.473529e+00 6.038226e-02
#> Nut clam Murex
#> 3.124139e-03 1.243300e-01
#> Angular crab Harbour crab
#> 1.359802e-01 7.137132e-02
#> Red snapping shrimp Spotted flounder
#> 6.862409e-02 1.833424e-01
#> Black goby Gurnards
#> 6.904834e-02 1.438723e-01
#> Red mullet Striped red mullet
#> 6.077036e-03 3.068191e-03
#> Hake Angler fish
#> 1.497468e-02 4.956061e-03
#> Poor cod Horse mackerel
#> 5.001440e-03 1.280838e-02
#> Shortfin squid Blue whiting
#> 8.499166e-03 9.740222e-03
#> Horned octopus Detritus
#> 1.544716e-02 2.544998e+02
#> carrion
#> 4.650807e-02
# \donttest{
sim <- project(NWMed_params, t_max = 3)
getBiomass(sim)
#> Biomass (4 times x 27 species) [g]
#> Small DF worms: min=0.651 mean=0.652 max=0.652
#> Small DF crustacea: min=0.16 mean=0.161 max=0.161
#> DF worms: min=0.783 mean=0.783 max=0.783
#> Endobenthic pred. crustacea: min=0.0714 mean=0.0714 max=0.0714
#> Suprabenthic crustacea: min=0.0307 mean=0.0307 max=0.0307
#> Endobenthic pred. worms: min=0.378 mean=0.378 max=0.378
#> Large DF worms: min=6.47 mean=6.47 max=6.47
#> Starfish: min=0.0604 mean=0.0604 max=0.0604
#> Nut clam: min=0.00312 mean=0.00312 max=0.00312
#> Murex: min=0.124 mean=0.124 max=0.124
#> Angular crab: min=0.136 mean=0.136 max=0.136
#> Harbour crab: min=0.0714 mean=0.0714 max=0.0714
#> Red snapping shrimp: min=0.0686 mean=0.0686 max=0.0686
#> Spotted flounder: min=0.183 mean=0.183 max=0.183
#> Black goby: min=0.069 mean=0.069 max=0.069
#> Gurnards: min=0.144 mean=0.144 max=0.144
#> Red mullet: min=0.00608 mean=0.00608 max=0.00608
#> Striped red mullet: min=0.00307 mean=0.00307 max=0.00307
#> Hake: min=0.015 mean=0.015 max=0.015
#> Angler fish: min=0.00496 mean=0.00496 max=0.00496
#> Poor cod: min=0.005 mean=0.00501 max=0.00501
#> Horse mackerel: min=0.0128 mean=0.0128 max=0.0128
#> Shortfin squid: min=0.0085 mean=0.0085 max=0.0085
#> Blue whiting: min=0.00974 mean=0.00974 max=0.00974
#> Horned octopus: min=0.0154 mean=0.0154 max=0.0154
#> Detritus: min=254 mean=255 max=255
#> carrion: min=0.0465 mean=0.0465 max=0.0465
# }